J3_6Q8Y_032

3D structure

PDB id

6Q8Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the mRNA translating and degrading yeast 80S ribosome-Xrn1 nuclease complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AGAUAAAAAAUCAAUG*CUCUUUG*CAU

Length

26 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6Q8Y|1|2|A|213
6Q8Y|1|2|G|214
6Q8Y|1|2|A|215
6Q8Y|1|2|U|216
6Q8Y|1|2|A|217
6Q8Y|1|2|A|218
6Q8Y|1|2|A|219
6Q8Y|1|2|A|220
6Q8Y|1|2|A|221
6Q8Y|1|2|A|222
6Q8Y|1|2|U|223
6Q8Y|1|2|C|224
6Q8Y|1|2|A|225
6Q8Y|1|2|A|226
6Q8Y|1|2|U|227
6Q8Y|1|2|G|228
*
6Q8Y|1|2|C|237
6Q8Y|1|2|U|238
6Q8Y|1|2|C|239
6Q8Y|1|2|U|240
6Q8Y|1|2|U|241
6Q8Y|1|2|U|242
6Q8Y|1|2|G|243
*
6Q8Y|1|2|C|250
6Q8Y|1|2|A|251
6Q8Y|1|2|U|252

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain S

40S ribosomal protein S4-A

Chain T

40S ribosomal protein S6-A

Chain X

40S ribosomal protein S11-A