J3_6Q8Y_039
3D structure
- PDB id
- 6Q8Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the mRNA translating and degrading yeast 80S ribosome-Xrn1 nuclease complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- AGAUGG*CGUUUCAAAG*CACCAU
- Length
- 22 nucleotides
- Bulged bases
- 6Q8Y|1|BQ|C|1556, 6Q8Y|1|BQ|A|1558
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6Q8Y|1|BQ|A|1537
6Q8Y|1|BQ|G|1538
6Q8Y|1|BQ|A|1539
6Q8Y|1|BQ|U|1540
6Q8Y|1|BQ|G|1541
6Q8Y|1|BQ|G|1542
*
6Q8Y|1|BQ|C|1551
6Q8Y|1|BQ|G|1552
6Q8Y|1|BQ|U|1553
6Q8Y|1|BQ|U|1554
6Q8Y|1|BQ|U|1555
6Q8Y|1|BQ|C|1556
6Q8Y|1|BQ|A|1557
6Q8Y|1|BQ|A|1558
6Q8Y|1|BQ|A|1559
6Q8Y|1|BQ|G|1560
*
6Q8Y|1|BQ|C|1579
6Q8Y|1|BQ|A|1580
6Q8Y|1|BQ|C|1581
6Q8Y|1|BQ|C|1582
6Q8Y|1|BQ|A|1583
6Q8Y|1|BQ|U|1584
Current chains
- Chain BQ
- 25S ribosomal RNA
Nearby chains
- Chain AA
- 60S ribosomal protein L8-A
- Chain AF
- 60S ribosomal protein L37-A
- Chain AH
- 60S ribosomal protein L25
- Chain AQ
- 60S ribosomal protein L15-A
- Chain AW
- 60S ribosomal protein L2-A
- Chain BS
- 5.8S ribosomal RNA; 5.8S rRNA
Coloring options: