J3_6Q8Y_042
3D structure
- PDB id
- 6Q8Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the mRNA translating and degrading yeast 80S ribosome-Xrn1 nuclease complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- UAGAUG*CAUAGCAGG*CGAAUUGCAAUGUCA
- Length
- 30 nucleotides
- Bulged bases
- 6Q8Y|1|BQ|A|3172, 6Q8Y|1|BQ|G|3173, 6Q8Y|1|BQ|A|3215, 6Q8Y|1|BQ|G|3216, 6Q8Y|1|BQ|C|3217, 6Q8Y|1|BQ|G|3219, 6Q8Y|1|BQ|A|3268, 6Q8Y|1|BQ|U|3270, 6Q8Y|1|BQ|C|3272
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6Q8Y_042 not in the Motif Atlas
- Homologous match to J3_8P9A_064
- Geometric discrepancy: 0.1925
- The information below is about J3_8P9A_064
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_03190.1
- Basepair signature
- cWW-F-F-F-F-F-F-F-cWW-F-F-F-cWW-F
- Number of instances in this motif group
- 1
Unit IDs
6Q8Y|1|BQ|U|3171
6Q8Y|1|BQ|A|3172
6Q8Y|1|BQ|G|3173
6Q8Y|1|BQ|A|3174
6Q8Y|1|BQ|U|3175
6Q8Y|1|BQ|G|3176
*
6Q8Y|1|BQ|C|3212
6Q8Y|1|BQ|A|3213
6Q8Y|1|BQ|U|3214
6Q8Y|1|BQ|A|3215
6Q8Y|1|BQ|G|3216
6Q8Y|1|BQ|C|3217
6Q8Y|1|BQ|A|3218
6Q8Y|1|BQ|G|3219
6Q8Y|1|BQ|G|3220
*
6Q8Y|1|BQ|C|3265
6Q8Y|1|BQ|G|3266
6Q8Y|1|BQ|A|3267
6Q8Y|1|BQ|A|3268
6Q8Y|1|BQ|U|3269
6Q8Y|1|BQ|U|3270
6Q8Y|1|BQ|G|3271
6Q8Y|1|BQ|C|3272
6Q8Y|1|BQ|A|3273
6Q8Y|1|BQ|A|3274
6Q8Y|1|BQ|U|3275
6Q8Y|1|BQ|G|3276
6Q8Y|1|BQ|U|3277
6Q8Y|1|BQ|C|3278
6Q8Y|1|BQ|A|3279
Current chains
- Chain BQ
- 25S ribosomal RNA
Nearby chains
- Chain AM
- 60S ribosomal protein L14-A
- Chain AU
- 60S ribosomal protein L16-A
- Chain AX
- 60S ribosomal protein L17-A
- Chain BK
- 60S ribosomal protein L33-A
- Chain BM
- 60S ribosomal protein L6-A
Coloring options: