J3_6Q8Y_043
3D structure
- PDB id
- 6Q8Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the mRNA translating and degrading yeast 80S ribosome-Xrn1 nuclease complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- AC*GAUACGU*AAUCU
- Length
- 14 nucleotides
- Bulged bases
- 6Q8Y|1|BS|U|60, 6Q8Y|1|BS|C|62
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6Q8Y_043 not in the Motif Atlas
- Homologous match to J3_8P9A_067
- Geometric discrepancy: 0.1348
- The information below is about J3_8P9A_067
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_01004.1
- Basepair signature
- cWW-cWW-F-F-F-cWW-F-cWW
- Number of instances in this motif group
- 10
Unit IDs
6Q8Y|1|BS|A|44
6Q8Y|1|BS|C|45
*
6Q8Y|1|BS|G|58
6Q8Y|1|BS|A|59
6Q8Y|1|BS|U|60
6Q8Y|1|BS|A|61
6Q8Y|1|BS|C|62
6Q8Y|1|BS|G|63
6Q8Y|1|BS|U|64
*
6Q8Y|1|BS|A|96
6Q8Y|1|BS|A|97
6Q8Y|1|BS|U|98
6Q8Y|1|BS|C|99
6Q8Y|1|BS|U|100
Current chains
- Chain BS
- 5.8S ribosomal RNA
Nearby chains
- Chain AF
- 60S ribosomal protein L37-A
- Chain AH
- 60S ribosomal protein L25
- Chain AL
- 60S ribosomal protein L39
- Chain BP
- 60S ribosomal protein L35-A
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