J3_6Q9A_003

3D structure

PDB id

6Q9A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tmRNA SmpB bound past E site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

UGAUCUA*UGG*CAAA

Length

14 nucleotides

Bulged bases

6Q9A|1|1|U|686, 6Q9A|1|1|A|792

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6Q9A_003 not in the Motif Atlas

Homologous match to J3_5J7L_038

Geometric discrepancy: 0.1153

The information below is about J3_5J7L_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_64189.2

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

6Q9A|1|1|U|683
6Q9A|1|1|G|684
6Q9A|1|1|A|685
6Q9A|1|1|U|686
6Q9A|1|1|C|687
6Q9A|1|1|U|688
6Q9A|1|1|A|689
*
6Q9A|1|1|U|773
6Q9A|1|1|G|774
6Q9A|1|1|G|775
*
6Q9A|1|1|C|791
6Q9A|1|1|A|792
6Q9A|1|1|A|793
6Q9A|1|1|A|794

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain B

50S ribosomal protein L2

Chain d

50S ribosomal protein L34