J3_6Q9A_008

3D structure

PDB id

6Q9A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tmRNA SmpB bound past E site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

UCGACC*GAAA*UA

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6Q9A_008 not in the Motif Atlas

Homologous match to J3_5J7L_043

Geometric discrepancy: 0.1335

The information below is about J3_5J7L_043

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_92705.1

Basepair signature

cWW-F-cWW-F-F-F-F-F-cWW

Number of instances in this motif group

1

Unit IDs

6Q9A|1|1|U|1344
6Q9A|1|1|C|1345
6Q9A|1|1|G|1346
6Q9A|1|1|A|1347
6Q9A|1|1|C|1348
6Q9A|1|1|C|1349
*
6Q9A|1|1|G|1382
6Q9A|1|1|A|1383
6Q9A|1|1|A|1384
6Q9A|1|1|A|1385
*
6Q9A|1|1|U|1402
6Q9A|1|1|A|1403

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain T

50S ribosomal protein L23