J3_6Q9A_029

3D structure

PDB id

6Q9A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tmRNA SmpB bound past E site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GGAU*AUUUAAAG*CAC

Length

15 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6Q9A|1|1|G|1055
6Q9A|1|1|G|1056
6Q9A|1|1|A|1057
6Q9A|1|1|U|1058
*
6Q9A|1|1|A|1080
6Q9A|1|1|U|1081
6Q9A|1|1|U|1082
6Q9A|1|1|U|1083
6Q9A|1|1|A|1084
6Q9A|1|1|A|1085
6Q9A|1|1|A|1086
6Q9A|1|1|G|1087
*
6Q9A|1|1|C|1102
6Q9A|1|1|A|1103
6Q9A|1|1|C|1104

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain H

50S ribosomal protein L10

Chain I

50S ribosomal protein L11

Chain f

50S ribosomal protein L36