J3_6Q9A_035

3D structure

PDB id

6Q9A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tmRNA SmpB bound past E site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GCUGAUUCUGGAUUCGACGGGA*UUUCGGACG*CCAGCU

Length

37 nucleotides

Bulged bases

6Q9A|1|4|U|10, 6Q9A|1|4|C|11, 6Q9A|1|4|U|12, 6Q9A|1|4|G|13, 6Q9A|1|4|G|14, 6Q9A|1|4|U|16, 6Q9A|1|4|U|17, 6Q9A|1|4|G|333, 6Q9A|1|4|C|335

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6Q9A|1|4|G|4
6Q9A|1|4|C|5
6Q9A|1|4|U|6
6Q9A|1|4|G|7
6Q9A|1|4|A|8
6Q9A|1|4|U|9
6Q9A|1|4|U|10
6Q9A|1|4|C|11
6Q9A|1|4|U|12
6Q9A|1|4|G|13
6Q9A|1|4|G|14
6Q9A|1|4|A|15
6Q9A|1|4|U|16
6Q9A|1|4|U|17
6Q9A|1|4|C|18
6Q9A|1|4|G|19
6Q9A|1|4|A|20
6Q9A|1|4|C|21
6Q9A|1|4|G|22
6Q9A|1|4|G|23
6Q9A|1|4|G|24
6Q9A|1|4|A|25
*
6Q9A|1|4|U|328
6Q9A|1|4|U|329
6Q9A|1|4|U|330
6Q9A|1|4|C|331
6Q9A|1|4|G|332
6Q9A|1|4|G|333
6Q9A|1|4|A|334
6Q9A|1|4|C|335
6Q9A|1|4|G|336
*
6Q9A|1|4|C|352
6Q9A|1|4|C|353
6Q9A|1|4|A|354
6Q9A|1|4|G|355
6Q9A|1|4|C|356
6Q9A|1|4|U|357

Current chains

Chain 4

tmRNA

Nearby chains

Chain 5

SsrA-binding protein