J3_6Q9A_036
3D structure
- PDB id
- 6Q9A (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of tmRNA SmpB bound past E site of E. coli 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- GGCUAUAGCUCAGCUGGGAGAGCGC*GAGGUCU*AUAGC
- Length
- 37 nucleotides
- Bulged bases
- 6Q9A|1|7|U|17, 6Q9A|1|7|G|18, 6Q9A|1|7|G|19, 6Q9A|1|7|G|20, 6Q9A|1|7|U|47
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6Q9A|1|7|G|3
6Q9A|1|7|G|4
6Q9A|1|7|C|5
6Q9A|1|7|U|6
6Q9A|1|7|A|7
6Q9A|1|7|U|8
6Q9A|1|7|A|9
6Q9A|1|7|G|10
6Q9A|1|7|C|11
6Q9A|1|7|U|12
6Q9A|1|7|C|13
6Q9A|1|7|A|14
6Q9A|1|7|G|15
6Q9A|1|7|C|16
6Q9A|1|7|U|17
6Q9A|1|7|G|18
6Q9A|1|7|G|19
6Q9A|1|7|G|20
6Q9A|1|7|A|21
6Q9A|1|7|G|22
6Q9A|1|7|A|23
6Q9A|1|7|G|24
6Q9A|1|7|C|25
6Q9A|1|7|G|26
6Q9A|1|7|C|27
*
6Q9A|1|7|G|43
6Q9A|1|7|A|44
6Q9A|1|7|G|45
6Q9A|1|7|G|46
6Q9A|1|7|U|47
6Q9A|1|7|C|48
6Q9A|1|7|U|49
*
6Q9A|1|7|A|65
6Q9A|1|7|U|66
6Q9A|1|7|A|67
6Q9A|1|7|G|68
6Q9A|1|7|C|69
Current chains
- Chain 7
- P-site tRNA
Nearby chains
- Chain 1
- Large subunit ribosomal RNA; LSU rRNA
- Chain 2
- Small subunit ribosomal RNA; SSU rRNA
- Chain E
- 50S ribosomal protein L5
- Chain M
- 50S ribosomal protein L16
- Chain r
- 30S ribosomal protein S13
Coloring options: