J3_6QIK_028

3D structure

PDB id

6QIK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GAC*GCUAAGGAGUG*CUCAC

Length

19 nucleotides

Bulged bases

6QIK|1|A|A|1263

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6QIK|1|A|G|1230
6QIK|1|A|A|1231
6QIK|1|A|C|1232
*
6QIK|1|A|G|1256
6QIK|1|A|C|1257
6QIK|1|A|U|1258
6QIK|1|A|A|1259
6QIK|1|A|A|1260
6QIK|1|A|G|1261
6QIK|1|A|G|1262
6QIK|1|A|A|1263
6QIK|1|A|G|1264
6QIK|1|A|U|1265
6QIK|1|A|G|1266
*
6QIK|1|A|C|1275
6QIK|1|A|U|1276
6QIK|1|A|C|1277
6QIK|1|A|A|1278
6QIK|1|A|C|1279

Current chains

Chain A

25S ribosomal RNA

Nearby chains