3D structure

PDB id
6QIK (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
UAGAUG*CAUAGCAGG*CGAAUUGCAAUGUCA
Length
30 nucleotides
Bulged bases
6QIK|1|A|A|3172, 6QIK|1|A|G|3173, 6QIK|1|A|A|3174, 6QIK|1|A|U|3175, 6QIK|1|A|A|3215, 6QIK|1|A|G|3216, 6QIK|1|A|C|3217, 6QIK|1|A|G|3219, 6QIK|1|A|A|3268, 6QIK|1|A|C|3272
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

6QIK|1|A|U|3171
6QIK|1|A|A|3172
6QIK|1|A|G|3173
6QIK|1|A|A|3174
6QIK|1|A|U|3175
6QIK|1|A|G|3176
*
6QIK|1|A|C|3212
6QIK|1|A|A|3213
6QIK|1|A|U|3214
6QIK|1|A|A|3215
6QIK|1|A|G|3216
6QIK|1|A|C|3217
6QIK|1|A|A|3218
6QIK|1|A|G|3219
6QIK|1|A|G|3220
*
6QIK|1|A|C|3265
6QIK|1|A|G|3266
6QIK|1|A|A|3267
6QIK|1|A|A|3268
6QIK|1|A|U|3269
6QIK|1|A|U|3270
6QIK|1|A|G|3271
6QIK|1|A|C|3272
6QIK|1|A|A|3273
6QIK|1|A|A|3274
6QIK|1|A|U|3275
6QIK|1|A|G|3276
6QIK|1|A|U|3277
6QIK|1|A|C|3278
6QIK|1|A|A|3279

Current chains

Chain A
25S ribosomal RNA

Nearby chains

Chain G
60S ribosomal protein L6-A
Chain J
60S ribosomal protein L16-B
Chain M
60S ribosomal protein L14-A
Chain f
60S ribosomal protein L33-A

Coloring options:

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