J3_6QIK_029
3D structure
- PDB id
- 6QIK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- UAGAUG*CAUAGCAGG*CGAAUUGCAAUGUCA
- Length
- 30 nucleotides
- Bulged bases
- 6QIK|1|A|A|3172, 6QIK|1|A|G|3173, 6QIK|1|A|A|3174, 6QIK|1|A|U|3175, 6QIK|1|A|A|3215, 6QIK|1|A|G|3216, 6QIK|1|A|C|3217, 6QIK|1|A|G|3219, 6QIK|1|A|A|3268, 6QIK|1|A|C|3272
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6QIK|1|A|U|3171
6QIK|1|A|A|3172
6QIK|1|A|G|3173
6QIK|1|A|A|3174
6QIK|1|A|U|3175
6QIK|1|A|G|3176
*
6QIK|1|A|C|3212
6QIK|1|A|A|3213
6QIK|1|A|U|3214
6QIK|1|A|A|3215
6QIK|1|A|G|3216
6QIK|1|A|C|3217
6QIK|1|A|A|3218
6QIK|1|A|G|3219
6QIK|1|A|G|3220
*
6QIK|1|A|C|3265
6QIK|1|A|G|3266
6QIK|1|A|A|3267
6QIK|1|A|A|3268
6QIK|1|A|U|3269
6QIK|1|A|U|3270
6QIK|1|A|G|3271
6QIK|1|A|C|3272
6QIK|1|A|A|3273
6QIK|1|A|A|3274
6QIK|1|A|U|3275
6QIK|1|A|G|3276
6QIK|1|A|U|3277
6QIK|1|A|C|3278
6QIK|1|A|A|3279
Current chains
- Chain A
- 25S ribosomal RNA
Nearby chains
- Chain G
- 60S ribosomal protein L6-A
- Chain J
- 60S ribosomal protein L16-B
- Chain M
- 60S ribosomal protein L14-A
- Chain f
- 60S ribosomal protein L33-A
Coloring options: