J3_6QNQ_007
3D structure
- PDB id
- 6QNQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome initiation complex (IC) with experimentally assigned potassium ions
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.5 Å
Loop
- Sequence
- UUUAAUUC*GAAGAACCUUAC*GGCGA
- Length
- 25 nucleotides
- Bulged bases
- 6QNQ|1|13|A|975, 6QNQ|1|13|G|976, 6QNQ|1|13|A|978
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6QNQ_007 not in the Motif Atlas
- Homologous match to J3_4LFB_004
- Geometric discrepancy: 0.1121
- The information below is about J3_4LFB_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_88451.1
- Basepair signature
- cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
6QNQ|1|13|U|955
6QNQ|1|13|U|956
6QNQ|1|13|U|957
6QNQ|1|13|A|958
6QNQ|1|13|A|959
6QNQ|1|13|U|960
6QNQ|1|13|U|961
6QNQ|1|13|C|962
*
6QNQ|1|13|G|973
6QNQ|1|13|A|974
6QNQ|1|13|A|975
6QNQ|1|13|G|976
6QNQ|1|13|A|977
6QNQ|1|13|A|978
6QNQ|1|13|C|979
6QNQ|1|13|C|980
6QNQ|1|13|U|981
6QNQ|1|13|U|982
6QNQ|1|13|A|983
6QNQ|1|13|C|984
*
6QNQ|1|13|G|1221
6QNQ|1|13|G|1222
6QNQ|1|13|C|1223
6QNQ|1|13|G|1224
6QNQ|1|13|A|1225
Current chains
- Chain 13
- 16S ribosomal RNA
Nearby chains
- Chain 1I
- 30S ribosomal protein S10
- Chain 1K
- Transfer RNA; tRNA
- Chain 4I
- 30S ribosomal protein S13
- Chain 5I
- 30S ribosomal protein S14 type Z
- Chain AI
- 30S ribosomal protein S19
Coloring options: