J3_6QNQ_044

3D structure

PDB id

6QNQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome initiation complex (IC) with experimentally assigned potassium ions

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CAAG*CGCAAAC*GUG

Length

14 nucleotides

Bulged bases

6QNQ|1|1H|A|1609

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6QNQ_044 not in the Motif Atlas

Homologous match to J3_7RQB_008

Geometric discrepancy: 0.0802

The information below is about J3_7RQB_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_16623.1

Basepair signature

cWW-tSH-tWW-tHH-F-tHW-cWW-F-cWW

Number of instances in this motif group

2

Unit IDs

6QNQ|1|1H|C|1306
6QNQ|1|1H|A|1307
6QNQ|1|1H|A|1308
6QNQ|1|1H|G|1309
*
6QNQ|1|1H|C|1605
6QNQ|1|1H|G|1606
6QNQ|1|1H|C|1607
6QNQ|1|1H|A|1608
6QNQ|1|1H|A|1609
6QNQ|1|1H|A|1610
6QNQ|1|1H|C|1611
*
6QNQ|1|1H|G|1620
6QNQ|1|1H|U|1621
6QNQ|1|1H|G|1622

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains

Chain P8

50S ribosomal protein L34