J3_6QNQ_062
3D structure
- PDB id
- 6QNQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome initiation complex (IC) with experimentally assigned potassium ions
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.5 Å
Loop
- Sequence
- CUCAG*CGGAGAG*UAGAAG
- Length
- 18 nucleotides
- Bulged bases
- 6QNQ|1|14|G|2334, 6QNQ|1|14|A|2336
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6QNQ_062 not in the Motif Atlas
- Homologous match to J3_5J7L_071
- Geometric discrepancy: 0.4795
- The information below is about J3_5J7L_071
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_44961.1
- Basepair signature
- cWW-tSH-F-cWW-F-tHW-cWW-tWW-cWW-F
- Number of instances in this motif group
- 1
Unit IDs
6QNQ|1|14|C|2295
6QNQ|1|14|U|2296
6QNQ|1|14|C|2297
6QNQ|1|14|A|2298
6QNQ|1|14|G|2299
*
6QNQ|1|14|C|2317
6QNQ|1|14|G|2318
6QNQ|1|14|G|2319
6QNQ|1|14|A|2320
6QNQ|1|14|G|2321
6QNQ|1|14|A|2322
6QNQ|1|14|G|2323
*
6QNQ|1|14|U|2332
6QNQ|1|14|A|2333
6QNQ|1|14|G|2334
6QNQ|1|14|A|2335
6QNQ|1|14|A|2336
6QNQ|1|14|G|2337
Current chains
- Chain 14
- 23S ribosomal RNA
Nearby chains
- Chain 1J
- 5S ribosomal RNA; 5S rRNA
- Chain 2L
- Transfer RNA; tRNA
- Chain 49
- 50S ribosomal protein L5
- Chain 65
- 50S ribosomal protein L18
- Chain E5
- 50S ribosomal protein L27
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