3D structure

PDB id
6QUL (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of a bacterial 50S ribosomal subunit in complex with the novel quinoxolidinone antibiotic cadazolid
Experimental method
ELECTRON MICROSCOPY
Resolution
3 Å

Loop

Sequence
UCGACC*GAAA*UA
Length
12 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_6QUL_008 not in the Motif Atlas
Homologous match to J3_5J7L_043
Geometric discrepancy: 0.1169
The information below is about J3_5J7L_043
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_92705.1
Basepair signature
cWW-F-cWW-F-F-F-F-F-cWW
Number of instances in this motif group
1

Unit IDs

6QUL|1|A|U|1344
6QUL|1|A|C|1345
6QUL|1|A|G|1346
6QUL|1|A|A|1347
6QUL|1|A|C|1348
6QUL|1|A|C|1349
*
6QUL|1|A|G|1382
6QUL|1|A|A|1383
6QUL|1|A|A|1384
6QUL|1|A|A|1385
*
6QUL|1|A|U|1402
6QUL|1|A|A|1403

Current chains

Chain A
23S rRNA

Nearby chains

Chain U
50S ribosomal protein L23

Coloring options:


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