J3_6QUL_017

3D structure

PDB id

6QUL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a bacterial 50S ribosomal subunit in complex with the novel quinoxolidinone antibiotic cadazolid

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GGAAG*CGCGAUACAG*CGUAC

Length

20 nucleotides

Bulged bases

6QUL|1|A|U|321

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6QUL_017 not in the Motif Atlas

Homologous match to J3_5J7L_068

Geometric discrepancy: 0.065

The information below is about J3_5J7L_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46299.2

Basepair signature

cWW-F-F-F-cHH-cWW-tHS-F-cWW-cSW-tHS-cWW

Number of instances in this motif group

3

Unit IDs

6QUL|1|A|G|297
6QUL|1|A|G|298
6QUL|1|A|A|299
6QUL|1|A|A|300
6QUL|1|A|G|301
*
6QUL|1|A|C|316
6QUL|1|A|G|317
6QUL|1|A|C|318
6QUL|1|A|G|319
6QUL|1|A|A|320
6QUL|1|A|U|321
6QUL|1|A|A|322
6QUL|1|A|C|323
6QUL|1|A|A|324
6QUL|1|A|G|325
*
6QUL|1|A|C|337
6QUL|1|A|G|338
6QUL|1|A|U|339
6QUL|1|A|A|340
6QUL|1|A|C|341

Current chains

Chain A

23S rRNA

Nearby chains

Chain E

50S ribosomal protein L4

Chain V

50S ribosomal protein L24