J3_6QZP_003

3D structure

PDB id

6QZP (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution cryo-EM structure of the human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CC*GAGGGAGCGAGACCCGUCGCCG*CACGGGG

Length

31 nucleotides

Bulged bases

6QZP|1|L5|C|962, 6QZP|1|L5|C|967, 6QZP|1|L5|C|968, 6QZP|1|L5|C|969, 6QZP|1|L5|U|971, 6QZP|1|L5|C|1280

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6QZP|1|L5|C|712
6QZP|1|L5|C|713
*
6QZP|1|L5|G|955
6QZP|1|L5|A|956
6QZP|1|L5|G|957
6QZP|1|L5|G|958
6QZP|1|L5|G|959
6QZP|1|L5|A|960
6QZP|1|L5|G|961
6QZP|1|L5|C|962
6QZP|1|L5|G|963
6QZP|1|L5|A|964
6QZP|1|L5|G|965
6QZP|1|L5|A|966
6QZP|1|L5|C|967
6QZP|1|L5|C|968
6QZP|1|L5|C|969
6QZP|1|L5|G|970
6QZP|1|L5|U|971
6QZP|1|L5|C|972
6QZP|1|L5|G|973
6QZP|1|L5|C|974
6QZP|1|L5|C|975
6QZP|1|L5|G|976
*
6QZP|1|L5|C|1278
6QZP|1|L5|A|1279
6QZP|1|L5|C|1280
6QZP|1|L5|G|1281
6QZP|1|L5|G|1282
6QZP|1|L5|G|1283
6QZP|1|L5|G|1284

Current chains

Chain L5

28S rRNA (3773-MER)

Nearby chains

Chain LC

60S ribosomal protein L4

Chain LE

60S ribosomal protein L6

Chain LF

60S ribosomal protein L7

Chain Le

60S ribosomal protein L32