J3_6QZP_012

3D structure

PDB id

6QZP (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution cryo-EM structure of the human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GUC*GCCU(5MC)ACGAUCCU*A(OMG)GUGUC

Length

23 nucleotides

Bulged bases

6QZP|1|L5|U|4374

QA status

Modified nucleotides: 5MC, OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6QZP|1|L5|G|4228
6QZP|1|L5|U|4229
6QZP|1|L5|C|4230
*
6QZP|1|L5|G|4331
6QZP|1|L5|C|4332
6QZP|1|L5|C|4333
6QZP|1|L5|U|4334
6QZP|1|L5|5MC|4335
6QZP|1|L5|A|4336
6QZP|1|L5|C|4337
6QZP|1|L5|G|4338
6QZP|1|L5|A|4339
6QZP|1|L5|U|4340
6QZP|1|L5|C|4341
6QZP|1|L5|C|4342
6QZP|1|L5|U|4343
*
6QZP|1|L5|A|4369
6QZP|1|L5|OMG|4370
6QZP|1|L5|G|4371
6QZP|1|L5|U|4372
6QZP|1|L5|G|4373
6QZP|1|L5|U|4374
6QZP|1|L5|C|4375

Current chains

Chain L5

28S rRNA (3773-MER)

Nearby chains

Chain LQ

60S ribosomal protein L18

Chain LT

60S ribosomal protein L21

Chain La

60S ribosomal protein L27a

Chain Lo

60S ribosomal protein L36a

Chain S6

Transfer RNA; tRNA