J3_6QZP_033

3D structure

PDB id

6QZP (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution cryo-EM structure of the human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CAGUCC*GGUGCG*CGACG

Length

17 nucleotides

Bulged bases

6QZP|1|L5|C|704, 6QZP|1|L5|C|1295

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6QZP|1|L5|C|451
6QZP|1|L5|A|452
6QZP|1|L5|G|453
6QZP|1|L5|U|454
6QZP|1|L5|C|455
6QZP|1|L5|C|456
*
6QZP|1|L5|G|700
6QZP|1|L5|G|701
6QZP|1|L5|U|702
6QZP|1|L5|G|703
6QZP|1|L5|C|704
6QZP|1|L5|G|705
*
6QZP|1|L5|C|1292
6QZP|1|L5|G|1293
6QZP|1|L5|A|1294
6QZP|1|L5|C|1295
6QZP|1|L5|G|1296

Current chains

Chain L5

28S rRNA (3773-MER)

Nearby chains

Chain LE

60S ribosomal protein L6

Chain Le

60S ribosomal protein L32

Chain Lf

60S ribosomal protein L35a

Chain Lr

60S ribosomal protein L28