J3_6R5Q_017

3D structure

PDB id

6R5Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of XBP1u-paused ribosome nascent chain complex (post-state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CAU*GCUUCU*AAGG

Length

13 nucleotides

Bulged bases

6R5Q|1|5|U|4989

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6R5Q|1|5|C|4970
6R5Q|1|5|A|4971
6R5Q|1|5|U|4972
*
6R5Q|1|5|G|4986
6R5Q|1|5|C|4987
6R5Q|1|5|U|4988
6R5Q|1|5|U|4989
6R5Q|1|5|C|4990
6R5Q|1|5|U|4991
*
6R5Q|1|5|A|5060
6R5Q|1|5|A|5061
6R5Q|1|5|G|5062
6R5Q|1|5|G|5063

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain B

uL3

Chain P

uL22

Chain d

eL31