J3_6R5Q_023
3D structure
- PDB id
- 6R5Q (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of XBP1u-paused ribosome nascent chain complex (post-state)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- AUUC*GGACCAGAG*CAUUU
- Length
- 18 nucleotides
- Bulged bases
- 6R5Q|1|K|G|991
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6R5Q_023 not in the Motif Atlas
- Homologous match to J3_4V88_033
- Geometric discrepancy: 0.1082
- The information below is about J3_4V88_033
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_38616.1
- Basepair signature
- cWW-F-cWW-F-cWW-F-cWW-F-tWW-F-cWW
- Number of instances in this motif group
- 1
Unit IDs
6R5Q|1|K|A|938
6R5Q|1|K|U|939
6R5Q|1|K|U|940
6R5Q|1|K|C|941
*
6R5Q|1|K|G|985
6R5Q|1|K|G|986
6R5Q|1|K|A|987
6R5Q|1|K|C|988
6R5Q|1|K|C|989
6R5Q|1|K|A|990
6R5Q|1|K|G|991
6R5Q|1|K|A|992
6R5Q|1|K|G|993
*
6R5Q|1|K|C|1000
6R5Q|1|K|A|1001
6R5Q|1|K|U|1002
6R5Q|1|K|U|1003
6R5Q|1|K|U|1004
Current chains
- Chain K
- 18S ribosomal RNA
Nearby chains
- Chain A
- uL2
- Chain LL
- eS26
- Chain MM
- uS11
- Chain QQ
- ribosomal protein uS15
- Chain p
- ribosomal protein eL43
- Chain u
- 40S ribosomal protein S3a
Coloring options: