J3_6R5Q_027

3D structure

PDB id

6R5Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of XBP1u-paused ribosome nascent chain complex (post-state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CUUAAUUU*GGGAAACCUCAC*GGCUG

Length

25 nucleotides

Bulged bases

6R5Q|1|K|G|1256, 6R5Q|1|K|A|1258, 6R5Q|1|K|A|1260

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6R5Q_027 not in the Motif Atlas

Homologous match to J3_8C3A_040

Geometric discrepancy: 0.0972

The information below is about J3_8C3A_040

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_83516.3

Basepair signature

cWW-F-F-F-tWW-F-tSH-tSS-cSS-F-F-F-F-F-cWW-cWW-F-F-F

Number of instances in this motif group

4

Unit IDs

6R5Q|1|K|C|1237
6R5Q|1|K|U|1238
6R5Q|1|K|U|1239
6R5Q|1|K|A|1240
6R5Q|1|K|A|1241
6R5Q|1|K|U|1242
6R5Q|1|K|U|1243
6R5Q|1|K|U|1244
*
6R5Q|1|K|G|1255
6R5Q|1|K|G|1256
6R5Q|1|K|G|1257
6R5Q|1|K|A|1258
6R5Q|1|K|A|1259
6R5Q|1|K|A|1260
6R5Q|1|K|C|1261
6R5Q|1|K|C|1262
6R5Q|1|K|U|1263
6R5Q|1|K|C|1264
6R5Q|1|K|A|1265
6R5Q|1|K|C|1266
*
6R5Q|1|K|G|1516
6R5Q|1|K|G|1517
6R5Q|1|K|C|1518
6R5Q|1|K|U|1519
6R5Q|1|K|G|1520

Current chains

Chain K

18S ribosomal RNA

Nearby chains

Chain 9

uS14

Chain GG

uS10

Chain II

uS13

Chain WW

uS17