J3_6R5Q_033

3D structure

PDB id

6R5Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of XBP1u-paused ribosome nascent chain complex (post-state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CAAG*CCCAGCCCGUGGAC*GGUAG

Length

23 nucleotides

Bulged bases

6R5Q|1|5|C|216, 6R5Q|1|5|C|217, 6R5Q|1|5|A|218, 6R5Q|1|5|G|219, 6R5Q|1|5|U|224

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6R5Q|1|5|C|196
6R5Q|1|5|A|197
6R5Q|1|5|A|198
6R5Q|1|5|G|199
*
6R5Q|1|5|C|215
6R5Q|1|5|C|216
6R5Q|1|5|C|217
6R5Q|1|5|A|218
6R5Q|1|5|G|219
6R5Q|1|5|C|220
6R5Q|1|5|C|221
6R5Q|1|5|C|222
6R5Q|1|5|G|223
6R5Q|1|5|U|224
6R5Q|1|5|G|225
6R5Q|1|5|G|226
6R5Q|1|5|A|227
6R5Q|1|5|C|228
*
6R5Q|1|5|G|240
6R5Q|1|5|G|241
6R5Q|1|5|U|242
6R5Q|1|5|A|243
6R5Q|1|5|G|244

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain C

uL4

Chain Y

Ribosomal protein L26