J3_6R5Q_036

3D structure

PDB id

6R5Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of XBP1u-paused ribosome nascent chain complex (post-state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CAGUC*GUGCG*CGAUG

Length

15 nucleotides

Bulged bases

6R5Q|1|5|C|704, 6R5Q|1|5|U|1295

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6R5Q|1|5|C|451
6R5Q|1|5|A|452
6R5Q|1|5|G|453
6R5Q|1|5|U|454
6R5Q|1|5|C|455
*
6R5Q|1|5|G|701
6R5Q|1|5|U|702
6R5Q|1|5|G|703
6R5Q|1|5|C|704
6R5Q|1|5|G|705
*
6R5Q|1|5|C|1292
6R5Q|1|5|G|1293
6R5Q|1|5|A|1294
6R5Q|1|5|U|1295
6R5Q|1|5|G|1296

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain E

60S ribosomal protein L6

Chain e

eL32

Chain f

eL33

Chain r

eL28