J3_6R5Q_041
3D structure
- PDB id
- 6R5Q (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of XBP1u-paused ribosome nascent chain complex (post-state)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- CGGUUG*CCUUC*GCACCGCACGUUCGUG
- Length
- 27 nucleotides
- Bulged bases
- 6R5Q|1|5|U|4882, 6R5Q|1|5|A|4938, 6R5Q|1|5|C|4940, 6R5Q|1|5|A|4943, 6R5Q|1|5|C|4944, 6R5Q|1|5|U|4950
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6R5Q|1|5|C|4749
6R5Q|1|5|G|4750
6R5Q|1|5|G|4751
6R5Q|1|5|U|4752
6R5Q|1|5|U|4753
6R5Q|1|5|G|4754
*
6R5Q|1|5|C|4879
6R5Q|1|5|C|4880
6R5Q|1|5|U|4881
6R5Q|1|5|U|4882
6R5Q|1|5|C|4883
*
6R5Q|1|5|G|4936
6R5Q|1|5|C|4937
6R5Q|1|5|A|4938
6R5Q|1|5|C|4939
6R5Q|1|5|C|4940
6R5Q|1|5|G|4941
6R5Q|1|5|C|4942
6R5Q|1|5|A|4943
6R5Q|1|5|C|4944
6R5Q|1|5|G|4945
6R5Q|1|5|U|4946
6R5Q|1|5|U|4947
6R5Q|1|5|C|4948
6R5Q|1|5|G|4949
6R5Q|1|5|U|4950
6R5Q|1|5|G|4951
Current chains
- Chain 5
- 28S ribosomal RNA
Nearby chains
- Chain E
- 60S ribosomal protein L6
- Chain M
- Ribosomal protein L14
- Chain O
- uL13
- Chain f
- eL33
Coloring options: