J3_6R6G_002

3D structure

PDB id

6R6G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of XBP1u-paused ribosome nascent chain complex with SRP.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GUUGAAAAG*CG*CAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6R6G|1|5|G|373
6R6G|1|5|U|374
6R6G|1|5|U|375
6R6G|1|5|G|376
6R6G|1|5|A|377
6R6G|1|5|A|378
6R6G|1|5|A|379
6R6G|1|5|A|380
6R6G|1|5|G|381
*
6R6G|1|5|C|408
6R6G|1|5|G|409
*
6R6G|1|8|C|19
6R6G|1|8|A|20
6R6G|1|8|C|21

Current chains

Chain 5

28S ribosomal RNA

Chain 8

5.8S ribosomal RNA

Nearby chains

Chain C

uL4

Chain Y

Ribosomal protein L26

Chain l

eL39