J3_6R6G_003

3D structure

PDB id

6R6G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of XBP1u-paused ribosome nascent chain complex with SRP.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

UCC*GCCGGG*CCACGCGUCCCCCGCG

Length

25 nucleotides

Bulged bases

6R6G|1|5|C|820, 6R6G|1|5|G|832, 6R6G|1|5|C|833

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6R6G|1|5|U|720
6R6G|1|5|C|721
6R6G|1|5|C|722
*
6R6G|1|5|G|735
6R6G|1|5|C|736
6R6G|1|5|C|737
6R6G|1|5|G|738
6R6G|1|5|G|739
6R6G|1|5|G|740
*
6R6G|1|5|C|819
6R6G|1|5|C|820
6R6G|1|5|A|821
6R6G|1|5|C|822
6R6G|1|5|G|823
6R6G|1|5|C|824
6R6G|1|5|G|825
6R6G|1|5|U|826
6R6G|1|5|C|827
6R6G|1|5|C|828
6R6G|1|5|C|829
6R6G|1|5|C|830
6R6G|1|5|C|831
6R6G|1|5|G|832
6R6G|1|5|C|833
6R6G|1|5|G|834

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain C

uL4

Chain E

60S ribosomal protein L6

Chain F

uL30

Chain b

eL29