J3_6R6G_029

3D structure

PDB id

6R6G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of XBP1u-paused ribosome nascent chain complex with SRP.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CUUAAUUU*GGGAAACCUCAC*GGCUG

Length

25 nucleotides

Bulged bases

6R6G|1|K|G|1256, 6R6G|1|K|A|1258, 6R6G|1|K|A|1260

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6R6G_029 not in the Motif Atlas

Homologous match to J3_8C3A_040

Geometric discrepancy: 0.1073

The information below is about J3_8C3A_040

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_83516.3

Basepair signature

cWW-F-F-F-tWW-F-tSH-tSS-cSS-F-F-F-F-F-cWW-cWW-F-F-F

Number of instances in this motif group

4

Unit IDs

6R6G|1|K|C|1237
6R6G|1|K|U|1238
6R6G|1|K|U|1239
6R6G|1|K|A|1240
6R6G|1|K|A|1241
6R6G|1|K|U|1242
6R6G|1|K|U|1243
6R6G|1|K|U|1244
*
6R6G|1|K|G|1255
6R6G|1|K|G|1256
6R6G|1|K|G|1257
6R6G|1|K|A|1258
6R6G|1|K|A|1259
6R6G|1|K|A|1260
6R6G|1|K|C|1261
6R6G|1|K|C|1262
6R6G|1|K|U|1263
6R6G|1|K|C|1264
6R6G|1|K|A|1265
6R6G|1|K|C|1266
*
6R6G|1|K|G|1516
6R6G|1|K|G|1517
6R6G|1|K|C|1518
6R6G|1|K|U|1519
6R6G|1|K|G|1520

Current chains

Chain K

18S ribosomal RNA

Nearby chains

Chain 9

uS14

Chain GG

Ribosomal protein S20

Chain II

uS13

Chain WW

uS19