J3_6R6G_033

3D structure

PDB id

6R6G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of XBP1u-paused ribosome nascent chain complex with SRP.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CUGGC*GGACAAG*CCCGAGAUUG

Length

22 nucleotides

Bulged bases

6R6G|1|K|U|1477

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6R6G|1|K|C|1391
6R6G|1|K|U|1392
6R6G|1|K|G|1393
6R6G|1|K|G|1394
6R6G|1|K|C|1395
*
6R6G|1|K|G|1450
6R6G|1|K|G|1451
6R6G|1|K|A|1452
6R6G|1|K|C|1453
6R6G|1|K|A|1454
6R6G|1|K|A|1455
6R6G|1|K|G|1456
*
6R6G|1|K|C|1470
6R6G|1|K|C|1471
6R6G|1|K|C|1472
6R6G|1|K|G|1473
6R6G|1|K|A|1474
6R6G|1|K|G|1475
6R6G|1|K|A|1476
6R6G|1|K|U|1477
6R6G|1|K|U|1478
6R6G|1|K|G|1479

Current chains

Chain K

18S ribosomal RNA

Nearby chains

Chain 6

ribosomal protein RACK1

Chain 9

uS14

Chain FF

Ribosomal protein S28

Chain GG

Ribosomal protein S20

Chain KK

eS17

Chain UU

Ribosomal protein S16

Chain w

Ribosomal protein S3

Chain y

Ribosomal protein S5