J3_6R6G_035

3D structure

PDB id

6R6G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of XBP1u-paused ribosome nascent chain complex with SRP.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CAGUC*GUGCG*CGAUG

Length

15 nucleotides

Bulged bases

6R6G|1|5|C|580

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6R6G|1|5|C|445
6R6G|1|5|A|446
6R6G|1|5|G|447
6R6G|1|5|U|448
6R6G|1|5|C|449
*
6R6G|1|5|G|577
6R6G|1|5|U|578
6R6G|1|5|G|579
6R6G|1|5|C|580
6R6G|1|5|G|581
*
6R6G|1|5|C|853
6R6G|1|5|G|854
6R6G|1|5|A|855
6R6G|1|5|U|856
6R6G|1|5|G|857

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain E

60S ribosomal protein L6

Chain e

eL32

Chain f

eL33

Chain r

eL28