J3_6R6G_036

3D structure

PDB id

6R6G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of XBP1u-paused ribosome nascent chain complex with SRP.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

AGAU*GAAGGG*CAGCCGAU

Length

18 nucleotides

Bulged bases

6R6G|1|5|A|1865, 6R6G|1|5|G|1868

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6R6G|1|5|A|1844
6R6G|1|5|G|1845
6R6G|1|5|A|1846
6R6G|1|5|U|1847
*
6R6G|1|5|G|1864
6R6G|1|5|A|1865
6R6G|1|5|A|1866
6R6G|1|5|G|1867
6R6G|1|5|G|1868
6R6G|1|5|G|1869
*
6R6G|1|5|C|1894
6R6G|1|5|A|1895
6R6G|1|5|G|1896
6R6G|1|5|C|1897
6R6G|1|5|C|1898
6R6G|1|5|G|1899
6R6G|1|5|A|1900
6R6G|1|5|U|1901

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain 8

5.8S ribosomal RNA; 5.8S rRNA

Chain A

uL2

Chain G

eL8

Chain X

uL23

Chain j

Ribosomal protein L37