J3_6R6G_038

3D structure

PDB id

6R6G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of XBP1u-paused ribosome nascent chain complex with SRP.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

AGAUGG*CCAGU*AGGGUGUAAAU

Length

22 nucleotides

Bulged bases

6R6G|1|5|U|2156

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6R6G|1|5|A|1944
6R6G|1|5|G|1945
6R6G|1|5|A|1946
6R6G|1|5|U|1947
6R6G|1|5|G|1948
6R6G|1|5|G|1949
*
6R6G|1|5|C|1964
6R6G|1|5|C|1965
6R6G|1|5|A|1966
6R6G|1|5|G|1967
6R6G|1|5|U|1968
*
6R6G|1|5|A|2150
6R6G|1|5|G|2151
6R6G|1|5|G|2152
6R6G|1|5|G|2153
6R6G|1|5|U|2154
6R6G|1|5|G|2155
6R6G|1|5|U|2156
6R6G|1|5|A|2157
6R6G|1|5|A|2158
6R6G|1|5|A|2159
6R6G|1|5|U|2160

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain Z

60S ribosomal protein L27