J3_6R6G_041
3D structure
- PDB id
- 6R6G (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of XBP1u-paused ribosome nascent chain complex with SRP.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- CGGUUG*CCUUC*GCACCGCACGUUCGUG
- Length
- 27 nucleotides
- Bulged bases
- 6R6G|1|5|U|3364, 6R6G|1|5|A|3418, 6R6G|1|5|C|3420, 6R6G|1|5|A|3423, 6R6G|1|5|C|3424, 6R6G|1|5|U|3430
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6R6G|1|5|C|3312
6R6G|1|5|G|3313
6R6G|1|5|G|3314
6R6G|1|5|U|3315
6R6G|1|5|U|3316
6R6G|1|5|G|3317
*
6R6G|1|5|C|3361
6R6G|1|5|C|3362
6R6G|1|5|U|3363
6R6G|1|5|U|3364
6R6G|1|5|C|3365
*
6R6G|1|5|G|3416
6R6G|1|5|C|3417
6R6G|1|5|A|3418
6R6G|1|5|C|3419
6R6G|1|5|C|3420
6R6G|1|5|G|3421
6R6G|1|5|C|3422
6R6G|1|5|A|3423
6R6G|1|5|C|3424
6R6G|1|5|G|3425
6R6G|1|5|U|3426
6R6G|1|5|U|3427
6R6G|1|5|C|3428
6R6G|1|5|G|3429
6R6G|1|5|U|3430
6R6G|1|5|G|3431
Current chains
- Chain 5
- 28S ribosomal RNA
Nearby chains
- Chain E
- 60S ribosomal protein L6
- Chain M
- Ribosomal protein L14
- Chain O
- 60S ribosomal protein L13a
- Chain f
- eL33
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