J3_6R6P_004
3D structure
- PDB id
- 6R6P (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of XBP1u-paused ribosome nascent chain complex (rotated state)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- ACC*GAGGGAGCGAGACCCGUCGCCG*CACGGGGU
- Length
- 33 nucleotides
- Bulged bases
- 6R6P|1|5|C|962, 6R6P|1|5|G|963, 6R6P|1|5|G|965, 6R6P|1|5|C|968, 6R6P|1|5|G|1281
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6R6P|1|5|A|711
6R6P|1|5|C|712
6R6P|1|5|C|713
*
6R6P|1|5|G|955
6R6P|1|5|A|956
6R6P|1|5|G|957
6R6P|1|5|G|958
6R6P|1|5|G|959
6R6P|1|5|A|960
6R6P|1|5|G|961
6R6P|1|5|C|962
6R6P|1|5|G|963
6R6P|1|5|A|964
6R6P|1|5|G|965
6R6P|1|5|A|966
6R6P|1|5|C|967
6R6P|1|5|C|968
6R6P|1|5|C|969
6R6P|1|5|G|970
6R6P|1|5|U|971
6R6P|1|5|C|972
6R6P|1|5|G|973
6R6P|1|5|C|974
6R6P|1|5|C|975
6R6P|1|5|G|976
*
6R6P|1|5|C|1278
6R6P|1|5|A|1279
6R6P|1|5|C|1280
6R6P|1|5|G|1281
6R6P|1|5|G|1282
6R6P|1|5|G|1283
6R6P|1|5|G|1284
6R6P|1|5|U|1285
Current chains
- Chain 5
- 28S ribosomal RNA
Nearby chains
- Chain C
- uL4
- Chain E
- 60S ribosomal protein L6
- Chain F
- uL30
- Chain e
- eL32
- Chain f
- eL33
- Chain r
- eL28
Coloring options: