J3_6R6P_008

3D structure

PDB id

6R6P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of XBP1u-paused ribosome nascent chain complex (rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CAGGAC*GCUAAGG*CACCUG

Length

19 nucleotides

Bulged bases

6R6P|1|5|A|1998

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6R6P|1|5|C|1966
6R6P|1|5|A|1967
6R6P|1|5|G|1968
6R6P|1|5|G|1969
6R6P|1|5|A|1970
6R6P|1|5|C|1971
*
6R6P|1|5|G|1995
6R6P|1|5|C|1996
6R6P|1|5|U|1997
6R6P|1|5|A|1998
6R6P|1|5|A|1999
6R6P|1|5|G|2000
6R6P|1|5|G|2001
*
6R6P|1|5|C|2016
6R6P|1|5|A|2017
6R6P|1|5|C|2018
6R6P|1|5|C|2019
6R6P|1|5|U|2020
6R6P|1|5|G|2021

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain m

eL40

Chain s

60S acidic ribosomal protein P0

Chain t

Ribosomal protein L12