J3_6R6P_012

3D structure

PDB id

6R6P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of XBP1u-paused ribosome nascent chain complex (rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGAGAUG*CAGU*AGGGUGUAAAUCUC

Length

25 nucleotides

Bulged bases

6R6P|1|5|C|2768

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6R6P|1|5|G|2549
6R6P|1|5|G|2550
6R6P|1|5|A|2551
6R6P|1|5|G|2552
6R6P|1|5|A|2553
6R6P|1|5|U|2554
6R6P|1|5|G|2555
*
6R6P|1|5|C|2572
6R6P|1|5|A|2573
6R6P|1|5|G|2574
6R6P|1|5|U|2575
*
6R6P|1|5|A|2757
6R6P|1|5|G|2758
6R6P|1|5|G|2759
6R6P|1|5|G|2760
6R6P|1|5|U|2761
6R6P|1|5|G|2762
6R6P|1|5|U|2763
6R6P|1|5|A|2764
6R6P|1|5|A|2765
6R6P|1|5|A|2766
6R6P|1|5|U|2767
6R6P|1|5|C|2768
6R6P|1|5|U|2769
6R6P|1|5|C|2770

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain Z

60S ribosomal protein L27

Chain g

eL34