J3_6R6P_025

3D structure

PDB id

6R6P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of XBP1u-paused ribosome nascent chain complex (rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUG*UUCCG*CAAAG

Length

13 nucleotides

Bulged bases

6R6P|1|K|C|1138

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6R6P|1|K|C|1094
6R6P|1|K|U|1095
6R6P|1|K|G|1096
*
6R6P|1|K|U|1136
6R6P|1|K|U|1137
6R6P|1|K|C|1138
6R6P|1|K|C|1139
6R6P|1|K|G|1140
*
6R6P|1|K|C|1147
6R6P|1|K|A|1148
6R6P|1|K|A|1149
6R6P|1|K|A|1150
6R6P|1|K|G|1151

Current chains

Chain K

18S rRNA

Nearby chains

Chain HH

eS21

Chain JJ

40S ribosomal protein S27

Chain QQ

ribosomal protein uS15

Chain TT

Ribosomal protein S15a

Chain ZZ

eS26

Chain q

uS2

Chain v

uS5