J3_6R6P_037

3D structure

PDB id

6R6P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of XBP1u-paused ribosome nascent chain complex (rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GCGCAGUCC*GGUGC*GACGUC

Length

20 nucleotides

Bulged bases

6R6P|1|5|U|454, 6R6P|1|5|U|702, 6R6P|1|5|G|703

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6R6P|1|5|G|448
6R6P|1|5|C|449
6R6P|1|5|G|450
6R6P|1|5|C|451
6R6P|1|5|A|452
6R6P|1|5|G|453
6R6P|1|5|U|454
6R6P|1|5|C|455
6R6P|1|5|C|456
*
6R6P|1|5|G|700
6R6P|1|5|G|701
6R6P|1|5|U|702
6R6P|1|5|G|703
6R6P|1|5|C|704
*
6R6P|1|5|G|1293
6R6P|1|5|A|1294
6R6P|1|5|C|1295
6R6P|1|5|G|1296
6R6P|1|5|U|1297
6R6P|1|5|C|1298

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain E

60S ribosomal protein L6

Chain e

eL32

Chain f

eL33

Chain r

eL28