Loop J3_6R6P

3D structure

PDB id: 6R6P (explore in PDB, NAKB, or RNA 3D Hub)
Description: Structure of XBP1u-paused ribosome nascent chain complex (rotated state)
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å

Loop

Sequence: CAGUCGAGAGUGGACGGGAGCG*CGCG*CCCCCGGAGCCCCGCGGACGCUACG
Length: 51 nucleotides
Bulged bases: 6R6P|1|5|U|2090, 6R6P|1|5|A|2093, 6R6P|1|5|G|2094, 6R6P|1|5|G|2251, 6R6P|1|5|C|2256, 6R6P|1|5|G|2259, 6R6P|1|5|C|2260, 6R6P|1|5|C|2266, 6R6P|1|5|U|2267, 6R6P|1|5|C|2269
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

6R6P|1|5|C|2087
6R6P|1|5|A|2088
6R6P|1|5|G|2089
6R6P|1|5|U|2090
6R6P|1|5|C|2091
6R6P|1|5|G|2092
6R6P|1|5|A|2093
6R6P|1|5|G|2094
6R6P|1|5|A|2095
6R6P|1|5|G|2096
6R6P|1|5|U|2097
6R6P|1|5|G|2098
6R6P|1|5|G|2099
6R6P|1|5|A|2100
6R6P|1|5|C|2101
6R6P|1|5|G|2102
6R6P|1|5|G|2103
6R6P|1|5|G|2104
6R6P|1|5|A|2105
6R6P|1|5|G|2106
6R6P|1|5|C|2107
6R6P|1|5|G|2108
*
6R6P|1|5|C|2125
6R6P|1|5|G|2126
6R6P|1|5|C|2127
6R6P|1|5|G|2128
*
6R6P|1|5|C|2246
6R6P|1|5|C|2247
6R6P|1|5|C|2248
6R6P|1|5|C|2249
6R6P|1|5|C|2250
6R6P|1|5|G|2251
6R6P|1|5|G|2252
6R6P|1|5|A|2253
6R6P|1|5|G|2254
6R6P|1|5|C|2255
6R6P|1|5|C|2256
6R6P|1|5|C|2257
6R6P|1|5|C|2258
6R6P|1|5|G|2259
6R6P|1|5|C|2260
6R6P|1|5|G|2261
6R6P|1|5|G|2262
6R6P|1|5|A|2263
6R6P|1|5|C|2264
6R6P|1|5|G|2265
6R6P|1|5|C|2266
6R6P|1|5|U|2267
6R6P|1|5|A|2268
6R6P|1|5|C|2269
6R6P|1|5|G|2270

Current chains

Chain 5: 28S ribosomal RNA

Nearby chains

Chain C: uL4
Chain E: 60S ribosomal protein L6
Chain F: uL30
Chain Q: eL18
Chain r: eL28

J3_6R6P_038