J3_6R6P_039

3D structure

PDB id

6R6P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of XBP1u-paused ribosome nascent chain complex (rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AGAU*GAAGGG*CGGCCGAU

Length

18 nucleotides

Bulged bases

6R6P|1|5|A|2472, 6R6P|1|5|G|2475

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6R6P|1|5|A|2451
6R6P|1|5|G|2452
6R6P|1|5|A|2453
6R6P|1|5|U|2454
*
6R6P|1|5|G|2471
6R6P|1|5|A|2472
6R6P|1|5|A|2473
6R6P|1|5|G|2474
6R6P|1|5|G|2475
6R6P|1|5|G|2476
*
6R6P|1|5|C|2501
6R6P|1|5|G|2502
6R6P|1|5|G|2503
6R6P|1|5|C|2504
6R6P|1|5|C|2505
6R6P|1|5|G|2506
6R6P|1|5|A|2507
6R6P|1|5|U|2508

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain 8

5.8S ribosomal RNA; 5.8S rRNA

Chain A

uL2

Chain G

eL8

Chain X

uL23

Chain j

Ribosomal protein L37