J3_6R6P_049
3D structure
- PDB id
- 6R6P (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of XBP1u-paused ribosome nascent chain complex (rotated state)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- UGG*UAAGAG*CAUUA
- Length
- 14 nucleotides
- Bulged bases
- 6R6P|1|K|G|921
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6R6P_049 not in the Motif Atlas
- Homologous match to J3_8P9A_072
- Geometric discrepancy: 0.174
- The information below is about J3_8P9A_072
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17385.5
- Basepair signature
- cWW-F-cWW-cWW-tWH-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
6R6P|1|K|U|682
6R6P|1|K|G|683
6R6P|1|K|G|684
*
6R6P|1|K|U|918
6R6P|1|K|A|919
6R6P|1|K|A|920
6R6P|1|K|G|921
6R6P|1|K|A|922
6R6P|1|K|G|923
*
6R6P|1|K|C|1019
6R6P|1|K|A|1020
6R6P|1|K|U|1021
6R6P|1|K|U|1022
6R6P|1|K|A|1023
Current chains
- Chain K
- 18S rRNA
Nearby chains
- Chain EE
- Ribosomal protein S11
- Chain JJ
- 40S ribosomal protein S27
- Chain QQ
- ribosomal protein uS15
- Chain TT
- Ribosomal protein S15a
- Chain VV
- Ribosomal protein S23
- Chain y
- 40S ribosomal protein S7
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