J3_6R7Q_003

3D structure

PDB id

6R7Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of XBP1u-paused ribosome nascent chain complex with Sec61.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UCC*GCCGG*CCACGCGUCCCCCGCG

Length

24 nucleotides

Bulged bases

6R7Q|1|5|C|1237, 6R7Q|1|5|C|1252, 6R7Q|1|5|G|1271, 6R7Q|1|5|C|1272

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6R7Q|1|5|U|982
6R7Q|1|5|C|983
6R7Q|1|5|C|984
*
6R7Q|1|5|G|1070
6R7Q|1|5|C|1071
6R7Q|1|5|C|1072
6R7Q|1|5|G|1073
6R7Q|1|5|G|1074
*
6R7Q|1|5|C|1236
6R7Q|1|5|C|1237
6R7Q|1|5|A|1238
6R7Q|1|5|C|1239
6R7Q|1|5|G|1244
6R7Q|1|5|C|1245
6R7Q|1|5|G|1246
6R7Q|1|5|U|1247
6R7Q|1|5|C|1248
6R7Q|1|5|C|1249
6R7Q|1|5|C|1250
6R7Q|1|5|C|1251
6R7Q|1|5|C|1252
6R7Q|1|5|G|1271
6R7Q|1|5|C|1272
6R7Q|1|5|G|1273

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain C

uL4

Chain E

60S ribosomal protein L6

Chain F

uL30

Chain b

eL29