J3_6R84_021
3D structure
- PDB id
- 6R84 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast Vms1 (Q295L)-60S ribosomal subunit complex (pre-state with Arb1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- AGCUG*CACGUUCUAGCAUUCAAG*UGAU
- Length
- 27 nucleotides
- Bulged bases
- 6R84|1|1|G|2549, 6R84|1|1|U|2550, 6R84|1|1|U|2551, 6R84|1|1|C|2552, 6R84|1|1|U|2553, 6R84|1|1|A|2554, 6R84|1|1|U|2558, 6R84|1|1|U|2559, 6R84|1|1|C|2560
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6R84|1|1|A|2529
6R84|1|1|G|2530
6R84|1|1|C|2531
6R84|1|1|U|2532
6R84|1|1|G|2533
*
6R84|1|1|C|2546
6R84|1|1|A|2547
6R84|1|1|C|2548
6R84|1|1|G|2549
6R84|1|1|U|2550
6R84|1|1|U|2551
6R84|1|1|C|2552
6R84|1|1|U|2553
6R84|1|1|A|2554
6R84|1|1|G|2555
6R84|1|1|C|2556
6R84|1|1|A|2557
6R84|1|1|U|2558
6R84|1|1|U|2559
6R84|1|1|C|2560
6R84|1|1|A|2561
6R84|1|1|A|2562
6R84|1|1|G|2563
*
6R84|1|1|U|2578
6R84|1|1|G|2579
6R84|1|1|A|2580
6R84|1|1|U|2581
Current chains
- Chain 1
- 25S rRNA
Nearby chains
- Chain D
- 60S ribosomal protein L43-A
- Chain E
- 60S ribosomal protein L2-A
- Chain K
- 60S ribosomal protein L8-A
- Chain Z
- 60S ribosomal protein L25
- Chain b
- 60S ribosomal protein L27-A
- Chain e
- 60S ribosomal protein L30
- Chain i
- 60S ribosomal protein L34-A
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