J3_6R84_023

3D structure

PDB id

6R84 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast Vms1 (Q295L)-60S ribosomal subunit complex (pre-state with Arb1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UAGAUG*CAUAGCAGG*CGAAUUGCAAUGUCA

Length

30 nucleotides

Bulged bases

6R84|1|1|A|3172, 6R84|1|1|G|3173, 6R84|1|1|A|3215, 6R84|1|1|A|3268, 6R84|1|1|U|3270, 6R84|1|1|C|3272, 6R84|1|1|U|3277

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6R84_023 not in the Motif Atlas

Homologous match to J3_8P9A_064

Geometric discrepancy: 0.1946

The information below is about J3_8P9A_064

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_03190.1

Basepair signature

cWW-F-F-F-F-F-F-F-cWW-F-F-F-cWW-F

Number of instances in this motif group

1

Unit IDs

6R84|1|1|U|3171
6R84|1|1|A|3172
6R84|1|1|G|3173
6R84|1|1|A|3174
6R84|1|1|U|3175
6R84|1|1|G|3176
*
6R84|1|1|C|3212
6R84|1|1|A|3213
6R84|1|1|U|3214
6R84|1|1|A|3215
6R84|1|1|G|3216
6R84|1|1|C|3217
6R84|1|1|A|3218
6R84|1|1|G|3219
6R84|1|1|G|3220
*
6R84|1|1|C|3265
6R84|1|1|G|3266
6R84|1|1|A|3267
6R84|1|1|A|3268
6R84|1|1|U|3269
6R84|1|1|U|3270
6R84|1|1|G|3271
6R84|1|1|C|3272
6R84|1|1|A|3273
6R84|1|1|A|3274
6R84|1|1|U|3275
6R84|1|1|G|3276
6R84|1|1|U|3277
6R84|1|1|C|3278
6R84|1|1|A|3279

Current chains

Chain 1

25S rRNA

Nearby chains

Chain 5

60S ribosomal protein L17-A

Chain I

60S ribosomal protein L6-A

Chain O

60S ribosomal protein L14-A

Chain Q

60S ribosomal protein L16-A

Chain h

60S ribosomal protein L33-A