J3_6R86_007
3D structure
- PDB id
- 6R86 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast Vms1-60S ribosomal subunit complex (post-state)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- GGAC*GCUAAGG*CACC
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6R86_007 not in the Motif Atlas
- Geometric match to J3_8VTW_042
- Geometric discrepancy: 0.3354
- The information below is about J3_8VTW_042
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_46457.1
- Basepair signature
- cWW-F-F-F-F-cSS-cWW-F-F-F-cWW-F
- Number of instances in this motif group
- 1
Unit IDs
6R86|1|1|G|1229
6R86|1|1|G|1230
6R86|1|1|A|1231
6R86|1|1|C|1232
*
6R86|1|1|G|1256
6R86|1|1|C|1257
6R86|1|1|U|1258
6R86|1|1|A|1259
6R86|1|1|A|1260
6R86|1|1|G|1261
6R86|1|1|G|1262
*
6R86|1|1|C|1277
6R86|1|1|A|1278
6R86|1|1|C|1279
6R86|1|1|C|1280
Current chains
- Chain 1
- 25S ribosomal RNA
Nearby chains
- Chain P
- 60S ribosomal protein L12-A
- Chain r
- 60S acidic ribosomal protein P0
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