J3_6RBD_004
3D structure
- PDB id
- 6RBD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- State 1 of yeast Tsr1-TAP Rps20-Deltaloop pre-40S particles
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.47 Å
Loop
- Sequence
- AUCA*UAACUACUG*CAUUU
- Length
- 18 nucleotides
- Bulged bases
- 6RBD|1|2|C|934
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6RBD_004 not in the Motif Atlas
- Homologous match to J3_4V88_033
- Geometric discrepancy: 0.1013
- The information below is about J3_4V88_033
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_38616.1
- Basepair signature
- cWW-F-cWW-F-cWW-F-cWW-F-tWW-F-cWW
- Number of instances in this motif group
- 1
Unit IDs
6RBD|1|2|A|881
6RBD|1|2|U|882
6RBD|1|2|C|883
6RBD|1|2|A|884
*
6RBD|1|2|U|928
6RBD|1|2|A|929
6RBD|1|2|A|930
6RBD|1|2|C|931
6RBD|1|2|U|932
6RBD|1|2|A|933
6RBD|1|2|C|934
6RBD|1|2|U|935
6RBD|1|2|G|936
*
6RBD|1|2|C|943
6RBD|1|2|A|944
6RBD|1|2|U|945
6RBD|1|2|U|946
6RBD|1|2|U|947
Current chains
- Chain 2
- 20S ribosomal RNA
Nearby chains
- Chain B
- 40S ribosomal protein S1-A
- Chain N
- 40S ribosomal protein S13
- Chain O
- 40S ribosomal protein S14-A
- Chain h
- Pre-rRNA-processing protein PNO1
Coloring options: