J3_6RBD_008
3D structure
- PDB id
- 6RBD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- State 1 of yeast Tsr1-TAP Rps20-Deltaloop pre-40S particles
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.47 Å
Loop
- Sequence
- CUUAAUUU*GGGGAAACUCAC*GGCCG
- Length
- 25 nucleotides
- Bulged bases
- 6RBD|1|2|G|1199
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6RBD_008 not in the Motif Atlas
- Homologous match to J3_8C3A_040
- Geometric discrepancy: 0.3274
- The information below is about J3_8C3A_040
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_83516.3
- Basepair signature
- cWW-F-F-F-tWW-F-tSH-tSS-cSS-F-F-F-F-F-cWW-cWW-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
6RBD|1|2|C|1180
6RBD|1|2|U|1181
6RBD|1|2|U|1182
6RBD|1|2|A|1183
6RBD|1|2|A|1184
6RBD|1|2|U|1185
6RBD|1|2|U|1186
6RBD|1|2|U|1187
*
6RBD|1|2|G|1198
6RBD|1|2|G|1199
6RBD|1|2|G|1200
6RBD|1|2|G|1201
6RBD|1|2|A|1202
6RBD|1|2|A|1203
6RBD|1|2|A|1204
6RBD|1|2|C|1205
6RBD|1|2|U|1206
6RBD|1|2|C|1207
6RBD|1|2|A|1208
6RBD|1|2|C|1209
*
6RBD|1|2|G|1454
6RBD|1|2|G|1455
6RBD|1|2|C|1456
6RBD|1|2|C|1457
6RBD|1|2|G|1458
Current chains
- Chain 2
- 20S ribosomal RNA
Nearby chains
- Chain P
- 40S ribosomal protein S15
- Chain U
- 40S ribosomal protein S20
- Chain d
- 40S ribosomal protein S29-A
- Chain k
- Ribosome biogenesis protein TSR1
- Chain l
- Serine/threonine-protein kinase RIO2
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