J3_6RBD_009

3D structure

PDB id

6RBD (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 1 of yeast Tsr1-TAP Rps20-Deltaloop pre-40S particles

Experimental method

ELECTRON MICROSCOPY

Resolution

3.47 Å

Loop

Sequence

CCAGAC*GGGUGG*UUAGACG

Length

19 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6RBD|1|2|C|1215
6RBD|1|2|C|1216
6RBD|1|2|A|1217
6RBD|1|2|G|1218
6RBD|1|2|A|1219
6RBD|1|2|C|1220
*
6RBD|1|2|G|1263
6RBD|1|2|G|1264
6RBD|1|2|G|1265
6RBD|1|2|U|1266
6RBD|1|2|G|1267
6RBD|1|2|G|1268
*
6RBD|1|2|U|1442
6RBD|1|2|U|1443
6RBD|1|2|A|1444
6RBD|1|2|G|1445
6RBD|1|2|A|1446
6RBD|1|2|C|1447
6RBD|1|2|G|1448

Current chains

Chain 2

20S ribosomal RNA

Nearby chains

Chain i

Essential nuclear protein 1

Chain k

Ribosome biogenesis protein TSR1