J3_6RBD_010

3D structure

PDB id

6RBD (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 1 of yeast Tsr1-TAP Rps20-Deltaloop pre-40S particles

Experimental method

ELECTRON MICROSCOPY

Resolution

3.47 Å

Loop

Sequence

GUGGA*UUUGUC*GAUAAC

Length

17 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6RBD|1|2|G|1292
6RBD|1|2|U|1293
6RBD|1|2|G|1294
6RBD|1|2|G|1295
6RBD|1|2|A|1296
*
6RBD|1|2|U|1301
6RBD|1|2|U|1302
6RBD|1|2|U|1303
6RBD|1|2|G|1304
6RBD|1|2|U|1305
6RBD|1|2|C|1306
*
6RBD|1|2|G|1318
6RBD|1|2|A|1319
6RBD|1|2|U|1320
6RBD|1|2|A|1321
6RBD|1|2|A|1322
6RBD|1|2|C|1323

Current chains

Chain 2

20S ribosomal RNA

Nearby chains

Chain A

40S ribosomal protein S0-A

Chain C

40S ribosomal protein S2

Chain R

40S ribosomal protein S17-A