J3_6RBD_011

3D structure

PDB id

6RBD (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 1 of yeast Tsr1-TAP Rps20-Deltaloop pre-40S particles

Experimental method

ELECTRON MICROSCOPY

Resolution

3.47 Å

Loop

Sequence

UAACC*GGGAC*GUUUG

Length

15 nucleotides

Bulged bases

6RBD|1|2|U|1413, 6RBD|1|2|U|1414

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6RBD|1|2|U|1335
6RBD|1|2|A|1336
6RBD|1|2|A|1337
6RBD|1|2|C|1338
6RBD|1|2|C|1339
*
6RBD|1|2|G|1385
6RBD|1|2|G|1386
6RBD|1|2|G|1387
6RBD|1|2|A|1388
6RBD|1|2|C|1389
*
6RBD|1|2|G|1412
6RBD|1|2|U|1413
6RBD|1|2|U|1414
6RBD|1|2|U|1415
6RBD|1|2|G|1416

Current chains

Chain 2

20S ribosomal RNA

Nearby chains

Chain Q

40S ribosomal protein S16-A

Chain R

40S ribosomal protein S17-A

Chain U

40S ribosomal protein S20

Chain d

40S ribosomal protein S29-A